Electric properties of the water molecule in 1A1, 1B1, and 3B1 electronic states: Refined CASSCF and CASPT2 calculations

Summary The dipole moments and dipole polarizabilities of the ¹A₁, ¹B₁, and ³B₁ electronic states of the water molecule have been calculated by using the CASSCF approach followed by the evaluation of the dynamic electron correlation contribution by the second-order perturbation scheme CASPT2. All calculations have been carried out in a specifically extended ANO basis set which accounts for the Rydberg character of the two excited states. In order to estimate the correctness and accuracy of the present data a scan over a variety of different active spaces for the CASSCF wave function has been made. The present results are superior to earlier CASSCF calculations, although their qualitative features remain essentially the same. The dipole moments in ¹B₁ and ³B₁ states are predicted to be about 0.49 a.u. and 0.33 a.u., respectively, and have the opposite orientation with respect to the ground state dipole moment. The dipole polarizability tensors of the excited states are characterized by high anisotropy and are dominated by the in-plane component perpendicular to the symmetry axis. All their components are found to be about an order of magnitude larger than those of the ground state polarizability tensor. The excitation energy dependence on the choice of the active orbital space in the CASSCF reference function is also considered and the analysis of the present data concludes in the concept of what is called the mutually compatible active spaces for the two states involved in excitation. All CASPT2 results are in good agreement with the results of recent calculations carried out in the framework of the open-shell coupled cluster formalism. This agreement confirms the high efficiency of the CASSCF/CASPT2 approach to the treatment of the electron correlation effects.     

Generating conformational transition paths with low potential-energy barriers for proteins

The knowledge of conformational transition paths in proteins can be useful for understanding protein mechanisms. Recently, we have introduced the As-Rigid-As-Possible (ARAP) interpolation method, for generating interpolation paths between two protein conformations. The method was shown to preserve well the rigidity of the initial conformation along the path. However, because the method is totally geometry-based, the generated paths may be inconsistent because the atom interactions are ignored. Therefore, in this article, we would like to introduce a new method to generate conformational transition paths with low potential-energy barriers for proteins. The method is composed of three processing stages. First, ARAP interpolation is used for generating an initial path. Then, the path conformations are enhanced by a clash remover. Finally, Nudged Elastic Band, a path-optimization method, is used to produce a low-energy path. Large energy reductions are found in the paths obtained from the method than in those obtained from the ARAP interpolation method alone. The results also show that ARAP interpolation is a good candidate for generating an initial path because it leads to lower potential-energy paths than two other common methods for path interpolation.     

The dielectric function of LnSF rare-earth fluorosulfides (Ln=La, Ce): experiment and theory

The absorption properties of LaSF and CeSF in the UV-Visible range have been investigated on the basis of first principles density functional theory (DFT) calculations and from electron energy-loss spectroscopy (EELS) measurements. The extinction coefficient k, as well as the refractive index n, determined experimentally from the loss function Im(−1/ε), were compared with the corresponding factors extracted from the calculated dielectric tensor ε₂. The k and n values for the two compounds were expected to be very close to each other, owing to the chemical similarity of La and Ce. However, it was found that the nature of the electronic transitions in LaSF and CeSF strongly influences the k and n values with the result that the refractive index n and the extinction coefficient k are substantially larger for LaSF than for CeSF.     

The Quest for Single-Source Precursors for BaTiO3 and SrTiO3

The reactions between titanium alkoxides Ti(OR)₄ (R = Et,i Pr) and strontium -diketonates Sr(-dik)₂ (-dik = thd, acac) were investigated. The various Sr-Ti species, Sr₂Ti₂(-dik)₄ (OR)₈, have a 1:1 Sr:Ti stoichiometry and were characterized by elemental analysis, FT-IR and by single-crystal X-ray diffraction for Sr₂Ti₂(₃-OiPr)₂ (-OiPr)₄ (OiPr)₂(thd)₄ (1). The hydrolysis-polycondensation reactions of the various species were investigated and the resulting powders analyzed by light scattering and XRD. While acetone was found to have little influence on the hydrolysis reactions of the Sr-Ti species, polycondensation of Ti(OiPr)₄ in neat acetone offers a trinuclear enolate Ti(₃-O)₂(OCMe=CH₂)₃ (OiPr)₅(iPrOH) (4). Comparisons between the Ba-Ti and Sr-Ti systems are given.     

Synthesis and structural characterization of some titanium butoxides modified with chloroacetic acids

Reactions of Ti(OBu^s)₄ and Ti(OBuⁿ)₄ with chloroacetic acids (mono-, di-, and tri-) were carried out in toluene in 1:1 and 1:2 molar ratios at room temperature to generate new precursors of titania. These modified alkoxides/oxo-alkoxides were characterized by spectroscopic methods. A solution of Ti(OBuⁿ)₂(OOCCCl₃)₂ in toluene left for crystallization at ?30 °C yielded single crystals of the product Ti₆(μ₂-O)₂(μ₃-O)₂(μ₂-OC₄H₉)₂(OC₄H₉)₆(OOCCCl₃)₈. Single-crystal X-ray diffraction revealed the molecular structure to be composed of a hexanuclear unit in which two Ti₂O₁₀ units (made by two edge-sharing octahedra) are linked with two corner-sharing octahedra.     

Q(γ-H2AX), an analysis method for partial-body radiation exposure using γ-H2AX in nonhuman primate lymphocytes

We previously used the γ-H2AX assay as a biodosimeter for total-body-irradiation (TBI) exposure (γ-rays) in a rhesus macaque (Macaca mulatta) model. Utilizing peripheral blood lymphocytes and plucked hairs, we obtained statistically significant γ-H2AX responses days after total-body exposure to 1-8.5 Gy ((60)Co γ-rays at 55 cGy min(-1)). Here, we introduce a partial-body exposure analysis method, Q(γ-H2AX), which is based on the number of γ-H2AX foci per damaged cells as evident by having one or more γ-H2AX foci per cell. Results from the rhesus monkey - TBI study were used to establish Q(γ-H2AX) dose-response calibration curves to assess acute partial-body exposures. γ-H2AX foci were detected in plucked hairs for several days after in vivo irradiation demonstrating this assay's utility for dose assessment in various body regions. The quantitation of γ-H2AX may provide a robust biodosimeter for analyzing partial body exposures to ionizing radiation in humans.     

Spray-dried oil powder with ultrahigh oil content

We report a new facile route to the production of solid oil powders with an oil weight content of as high as 90% or beyond. The proposed method starts from a standard protein-stabilized oil-in-water emulsion in which a protein monolayer absorbed at the oil-water interface is successively cross linked by a thermal treatment. The emulsion is then spray dried as for ordinary emulsions, however without the addition of hydrocolloids typically needed when spray drying liquid oil dispersions. This leads to a final solid oil powder in which the total mass is constituted of oil, proteins, and eventual buffer salts and in which the elasticity of the cross-linked protein monolayer is alone sufficient to stabilize the powder and to limit any oil leakage. To best illustrate the potential in food applications and to preserve the food-grade nature of the constituents, we have used thermal denaturation at 80 °C for 15 min to cross link a β-lactoglobulin-stabilized olive oil-in-water emulsion and to produce the corresponding solid oil powder. Because of the simplicity and flexibility of the proposed pathway, the present method can be used inexpensively to convert any type of hydrophobic liquid into the corresponding solid powder and is then particularly suitable for cosmetic, pharmaceutical, medical, biotechnological, and food applications.     

Evaluation of the reliability of maize reference assays for GMO quantification

A reliable PCR reference assay for relative genetically modified organism (GMO) quantification must be specific for the target taxon and amplify uniformly along the commercialised varieties within the considered taxon. Different reference assays for maize (Zea mays L.) are used in official methods for GMO quantification. In this study, we evaluated the reliability of eight existing maize reference assays, four of which are used in combination with an event-specific polymerase chain reaction (PCR) assay validated and published by the Community Reference Laboratory (CRL). We analysed the nucleotide sequence variation in the target genomic regions in a broad range of transgenic and conventional varieties and lines: MON 810 varieties cultivated in Spain and conventional varieties from various geographical origins and breeding history. In addition, the reliability of the assays was evaluated based on their PCR amplification performance. A single base pair substitution, corresponding to a single nucleotide polymorphism (SNP) reported in an earlier study, was observed in the forward primer of one of the studied alcohol dehydrogenase 1 (Adh1) (70) assays in a large number of varieties. The SNP presence is consistent with a poor PCR performance observed for this assay along the tested varieties. The obtained data show that the Adh1 (70) assay used in the official CRL NK603 assay is unreliable. Based on our results from both the nucleotide stability study and the PCR performance test, we can conclude that the Adh1 (136) reference assay (T25 and Bt11 assays) as well as the tested high mobility group protein gene assay, which also form parts of CRL methods for quantification, are highly reliable. Despite the observed uniformity in the nucleotide sequence of the invertase gene assay, the PCR performance test reveals that this target sequence might occur in more than one copy. Finally, although currently not forming a part of official quantification methods, zein and SSIIb assays are found to be highly reliable in terms of nucleotide stability and PCR performance and are proposed as good alternative targets for a reference assay for maize.